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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC049283.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 58aa MW: 6463.36 Da PI: 8.2351 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 53.6 | 4.3e-17 | 1 | 38 | 23 | 59 |
EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 23 sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +YY+C++ gCp++k+ver+ +dp+++++tYegeH+h+ EcC049283.40 1 GYYKCSTMrGCPARKHVERAPDDPTMLIVTYEGEHRHS 38 5****9877****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 19.061 | 1 | 40 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.5E-17 | 1 | 40 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-8 | 1 | 39 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-14 | 1 | 37 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.45E-14 | 2 | 40 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004045 | Molecular Function | aminoacyl-tRNA hydrolase activity | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 58 aa Download sequence Send to blast |
GYYKCSTMRG CPARKHVERA PDDPTMLIVT YEGEHRHSQP ASQEIVPAGA MNLVFKST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010049827.1 | 1e-34 | PREDICTED: probable WRKY transcription factor 17 | ||||
Swissprot | Q9SV15 | 2e-23 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A059CW75 | 3e-33 | A0A059CW75_EUCGR; Uncharacterized protein | ||||
STRING | XP_010049827.1 | 5e-34 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 9e-26 | WRKY DNA-binding protein 11 |