PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049111.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 303aa    MW: 34555.5 Da    PI: 6.9907
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049111.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.4e-182886148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...........kgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll++ vk +G g+W+++ar+ g           ++Rt+k+c++rw++yl
     EcC049111.30 28 KGPWTAEEDALLANHVKIHGEGRWNLVARRAGrfliphriaprLKRTGKSCRLRWLNYL 86
                     79*******************************************************97 PP
2Myb_DNA-binding49.78.5e-1692135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
     EcC049111.30  92 RGNMTLEEQLLILELHCRWGNR-WSKIAQHLP-GRTDNEVKNYWRT 135
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8122386IPR017930Myb domain
SuperFamilySSF466891.8E-2825133IPR009057Homeodomain-like
SMARTSM007172.5E-152788IPR001005SANT/Myb domain
PfamPF002492.2E-162886IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-222993IPR009057Homeodomain-like
CDDcd001673.36E-113086No hitNo description
PROSITE profilePS5129422.99187141IPR017930Myb domain
SMARTSM007173.2E-1391139IPR001005SANT/Myb domain
PfamPF002491.8E-1492135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2194139IPR009057Homeodomain-like
CDDcd001676.60E-7112135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDFDHVMRSQ YDSPSSVRTE EVTSDVRKGP WTAEEDALLA NHVKIHGEGR WNLVARRAGR  60
FLIPHRIAPR LKRTGKSCRL RWLNYLRPDL RRGNMTLEEQ LLILELHCRW GNRWSKIAQH  120
LPGRTDNEVK NYWRTRVQKL AKHLKCDVNS KQFRDAMRCV WMPRFMEQIR ASTGQFRAST  180
QGPSDRPAED PPRTHGIGSG YPVYDDHRDS LPELSSSVSS SDSSDPRFSS SPSPNQASGI  240
GSECFGLGSG DGPNYWTGCA QWWQPGVDAG EQEDSNGCLV GEDSLESLWN EEDAWFLQQQ  300
LLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-2331391126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069752.10.0PREDICTED: transcription factor MYB108
SwissprotQ10MB43e-73MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A059AW271e-169A0A059AW27_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010069752.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.11e-74myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]