PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048878.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 344aa    MW: 37820.8 Da    PI: 7.245
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048878.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.6e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++ + ++G+g +W + +++ g++R++k+c++rw++yl
     EcC048878.10 14 KGPWSPEEDAKLKEFIDKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding39.81e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
     EcC048878.10  69 GEFTDEEDRIICTLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.222962IPR017930Myb domain
SuperFamilySSF466891.95E-2711109IPR009057Homeodomain-like
SMARTSM007176.3E-121364IPR001005SANT/Myb domain
PfamPF002493.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-241569IPR009057Homeodomain-like
CDDcd001679.72E-91662No hitNo description
PROSITE profilePS5129422.48763117IPR017930Myb domain
SMARTSM007178.4E-1367115IPR001005SANT/Myb domain
PfamPF002492.2E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2470117IPR009057Homeodomain-like
CDDcd001677.60E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEFID KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FTDEEDRIIC TLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLAGL  120
PSLPHHPSLQ QRTQPNPIIA SFASHANSHA HAHPLLSSSS TPPPSSSLSP PSQSSLSNSN  180
YFTSLAGLEQ SISYYSSSPN LQQQESFLGS MRQYEASCCS SSDGSSSSNN NNNQICSLGK  240
ERDYFDFSVC GNGPGDHHHM SFQRSFCSGV DDDGQKLVLG SVGAWSQEKQ SCDQTWVAEN  300
PSDYAGLEEI KQLISSASNC SSNNNNSFFL YEGKSDPEGA VMYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050853.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A059DFZ20.0A0A059DFZ2_EUCGR; Uncharacterized protein
STRINGXP_010050853.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-76myb domain protein 36