PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048783.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 329aa    MW: 36477.4 Da    PI: 6.3783
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048783.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016627223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +C++C+++F +   +  H+r+H
  EcC048783.10  6 VCTICNRRFANGKAMGGHMRSH 27
                  6*******************99 PP
2zf-C2H211.90.00067255277123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kCp C+k+F +   L  H ++H
  EcC048783.10 255 FKCPFCDKVFDSGQGLGGHKKVH 277
                   89********9999998888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.827532IPR007087Zinc finger, C2H2
SMARTSM003550.23527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PfamPF139121.1E-7729IPR007087Zinc finger, C2H2
SuperFamilySSF576674.24E-9202277No hitNo description
SMARTSM003556.7202224IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93202229IPR007087Zinc finger, C2H2
PROSITE patternPS000280204226IPR007087Zinc finger, C2H2
PfamPF139122.7E-7204225IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014255277IPR007087Zinc finger, C2H2
SMARTSM003550.017255277IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-7255277IPR007087Zinc finger, C2H2
PROSITE patternPS000280257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000724Biological Processdouble-strand break repair via homologous recombination
GO:0007062Biological Processsister chromatid cohesion
GO:0010165Biological Processresponse to X-ray
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEKNKVCTIC NRRFANGKAM GGHMRSHLAK LPLPPKQPDV QTKPAPVPAL SSSSLHPDRN  60
EATLKDFRGS PKIYLPHHRS ANSESSFVAS TDPALHDKGS EAESLRNPKG KRSSRCCKPA  120
MNEARAETSE QVSLDSENFS VEDVALCLLM LLRDSWTRKG KEVVQEAVDD ELAEEDEKDD  180
EDDGDDESFN ATLANHRPRP KYWCETCNKV FRSYQAYGGH KASHSHKRMK VLDSREKEGG  240
DGGAKTKTLT DKRLFKCPFC DKVFDSGQGL GGHKKVHFFN SAVSKSNINN DDDNAENKIG  300
ESRLDLNLPP SPEEEDSPEP VESSAVPDQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025302.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A059DJ271e-178A0A059DJ27_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010025302.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.18e-27C2H2-like zinc finger protein