![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC048543.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 937aa MW: 104798 Da PI: 6.0459 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.6 | 5.8e-29 | 608 | 659 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek i+l++l++yF++++k+AAk+Lgvc+T+LKriCRq+GIkRWP+Rkik++ EcC048543.20 608 AEKAITLQVLRQYFAGSLKNAAKSLGVCPTTLKRICRQHGIKRWPSRKIKKV 659 5899**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.291 | 598 | 679 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.2E-25 | 612 | 659 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 5.33E-21 | 827 | 918 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.1E-20 | 831 | 914 | No hit | No description |
PROSITE profile | PS51745 | 23.746 | 833 | 916 | IPR000270 | PB1 domain |
SMART | SM00666 | 9.7E-21 | 833 | 916 | IPR000270 | PB1 domain |
Pfam | PF00564 | 4.2E-15 | 834 | 915 | IPR000270 | PB1 domain |
CDD | cd06407 | 6.25E-37 | 834 | 914 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0005319 | Molecular Function | lipid transporter activity | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0020037 | Molecular Function | heme binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 937 aa Download sequence Send to blast |
MEDTVFSPIP MPSTAPESTM DVDYMDELLL EGCWLETVNG SEFLQQSPPS FGAFFDSPCQ 60 WSALENIECN SSPNQLQKNN QELMQTPLHP GDSPMEEGQT KPLDNPQSLS VVECSSRSDK 120 HVNEGSDLRR RWWIGPRVSS GSTSSVMNRL IHSLDHIRDL TKDKDVLIQI WVPVNRGDRR 180 FLTTNDQPFS LNPSSKRLSK YREISVNYQF SAKEDSKELM GLPSRVFLGK IPEWTPDVRF 240 FRSDEYARVD HAQHFDVRGT LALPIFEQGS RTCLGVIEVV MTTQKIQYQP EIQSVCKALE 300 AFDLRSSEVF GNLSEESHWK SYEAAIPEIR EVLRSACETH GLPLAQTWVP CSQQGKGGCR 360 HSNENYVHCV STIDHACHVA DPLLQPFHEA CSEHHLLKGQ GVVGRAFQTN QPCFSSDITS 420 SGRTEYPLSH HARMFGLCAA VAIRLRSIHT GTADFVLEFF LPMDCKDHDK QKKMLGSLSI 480 IIQQVCQSLR VITNEELEEE TVLPEIPVPS EGRPQGEWSL EVESNYLERC SEEDLSWSAH 540 VEKVQQSDTV ASATQKARAG ESFVEKSLDF GQFQDSSTER GEDCSFYGEG RCSDAAREKT 600 GDKKRTKAEK AITLQVLRQY FAGSLKNAAK SLGVCPTTLK RICRQHGIKR WPSRKIKKVG 660 HSLQKLQLVM DTVRVQGAPG PLQIDSFYTN FPELASPNLS ITSPLSASNH GDHLQPLDTQ 720 PGALNFDSCA AVSKSTSSSC SHSSSSSQCC SSGTKQHPSI VDLVAEEHLV SDNNMDINPS 780 KMVQSHVELQ GSSQEEQKLL PRSQSRRSFN PNMENPPQPP PQYNCQASRE GDPLRVKVAF 840 ADENIRFRMQ KDWDLKDLWG EIARRFCIED TSKFDLKYLD DDSEWVLLTC DADLDECIDV 900 SRSSPGSTVK LSVRKSHHRR LGSSLGSGGP PRMHGAS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010061177.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_010061178.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_018731556.1 | 0.0 | PREDICTED: protein NLP4 isoform X1 | ||||
Refseq | XP_018731557.1 | 0.0 | PREDICTED: protein NLP4 isoform X1 | ||||
Refseq | XP_018731558.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_018731559.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_018731560.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_018731561.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_018731562.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
Refseq | XP_018731563.1 | 0.0 | PREDICTED: protein NLP4 isoform X2 | ||||
TrEMBL | A0A059BPH8 | 0.0 | A0A059BPH8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010061177.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1998 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |