PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048466.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 355aa    MW: 40686.3 Da    PI: 7.3262
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048466.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.61.5e-36181092102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+ ++ ++sw  +++sfvv+d++ef+k+vLp+yFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F+kgkk+ll++ik
  EcC048466.30  18 FLRKTYEMVSDPGTDPVVSWGLSQDSFVVWDRQEFSKQVLPRYFKHSNFSSFIRQLNTYGFRKINPDQ---------WEFANQGFQKGKKNLLKNIK 105
                   9********************888*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
  EcC048466.30 106 RRRN 109
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.5E-5614107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.1E-3814107IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.67E-3414107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.9E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-3218107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
YDVAKPMEDL GVVGPTPFLR KTYEMVSDPG TDPVVSWGLS QDSFVVWDRQ EFSKQVLPRY  60
FKHSNFSSFI RQLNTYGFRK INPDQWEFAN QGFQKGKKNL LKNIKRRRNL NKHRKKSRST  120
VTSDYQKAEK EAELKMLKKD QEALKTKILK LIEEQDNLQH EIEQVAEQVR HADCRNQHLL  180
LFLIKAAKSP NFILHLTPKK KQKRDLETCE SSKKRELLGP DAEATKCLLD AMDHMIQSPK  240
VDCLKISDDL AQMERRPNSV VPEHLGTFQM HNPWPSMDGE DFRVAQGQTP NQMTGASSSD  300
LSSVFQGISE KLLKEDVVIG TDADNIEVED HLTLKDTGIY LELESLIDGM GTQVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-241110719129Heat shock factor protein 1
5d5v_B4e-241110719129Heat shock factor protein 1
5d5v_D4e-241110719129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100106LKNIKRR
2197203PKKKQKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049467.10.0PREDICTED: heat stress transcription factor A-2
TrEMBLA0A059CV300.0A0A059CV30_EUCGR; Uncharacterized protein
STRINGXP_010049467.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.17e-50heat shock transcription factor A9