PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047949.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 303aa    MW: 33557.8 Da    PI: 5.987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047949.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv++++q G g+W++ ++  g+ R++k+c++rw +yl
     EcC047949.20 14 KGPWTPEEDEILVEYIRQNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.64.4e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
     EcC047949.20  67 RGPFTPEEEKLVIQLHGILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-24563IPR009057Homeodomain-like
PROSITE profilePS5129419.249961IPR017930Myb domain
SuperFamilySSF466891.35E-3011108IPR009057Homeodomain-like
SMARTSM007173.7E-141363IPR001005SANT/Myb domain
PfamPF002492.3E-161461IPR001005SANT/Myb domain
CDDcd001671.83E-111661No hitNo description
PROSITE profilePS5129425.70962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2664116IPR009057Homeodomain-like
SMARTSM007177.3E-1566114IPR001005SANT/Myb domain
PfamPF002494.2E-1567112IPR001005SANT/Myb domain
CDDcd001671.72E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019048Biological Processmodulation by virus of host morphology or physiology
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRTPCCDKK DLKKGPWTPE EDEILVEYIR QNGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TPEEEKLVIQ LHGILGNRWA AIAAQLPGRT DNEIKNLWNT HLKKRLLCMG  120
LDPQTHEPFL TRGPMTNSPA STVTRHMAQW ESARLEAEAR LSRESNLFNP LPLQKADADH  180
FLRLWNSEVG ESFRKINMEM GRSPVSPASS CVKCESNSAI SAEMGPSLGG SAAVANDGDE  240
DKECETYKSY FQQMAAGTES SGSSALEDSS DTALQLLLDF PINNDISFLG GDIDQYASSS  300
GLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30111164108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053687.10.0PREDICTED: myb-related protein 308
SwissprotQ9M2D91e-127MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A059CI440.0A0A059CI44_EUCGR; Uncharacterized protein
STRINGXP_010053687.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-125myb domain protein 17