PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Basic Information? help Back to Top

TF ID

EcC047772.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

BBR-BPC

Protein Properties

Length: 288aa MW: 32174.9 Da PI: 10.3205

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC047772.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	311.4	3e-95	9	288	16	301
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslq 112 ++++l+ +++++m ++ e++++i+er+ a +++kaa+ +rd+af qr++al er+kal+erdn+ +al++ en++++++ + +g k +++ EcC047772.10 9 EKNALA--MNQKIMNILREKEQAIQERKDAEAQTKAAIGARDEAFRQREEALVERDKALMERDNARAALQYWENAINFTM--VGGNQHGLKRVHHPP 101 334555..99**************************************************************988655..334445666666666 PP GAGA_bind 113 qlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk...ekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDes 206 s+ ++++ + ++++a+pi++ + +a + ++ k+++++k +++++k k+ +e+ +v+ s+ ++++++++s d+ ln v ++ s EcC047772.10 102 Y-SQADIAEAL--NADVRITDAFPISSITADAIKPRQGKRSKEGKGIAlkgSSTQRKGKRVGEDL--NVQVLSHAKKVRSKWDSADVCLNLVVFNGS 193 5.334444443..4578889999999999999888888777766653300133344445544444..4555555588**************** PP GAGA_bind 207 tlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 t+PvPvCsCtG++r CYkWGnGGWqS+CCttt+S+yPLP+ +++r+aR++grKmS+++f+klL++LaaeG dls p+DLkd+WAkHGtn+++ti+ EcC047772.10 194 TMPVPVCSCTGIPRHCYKWGNGGWQSSCCTTTLSMYPLPQIPHKRHARVSGRKMSGSVFTKLLSRLAAEGQDLSIPLDLKDYWAKHGTNRYITIK 288 ********************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	8.7E-109	1	288	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.8E-89	8	288	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046686	Biological Process	response to cadmium ion
GO:0055114	Biological Process	oxidation-reduction process
GO:0005829	Cellular Component	cytosol
GO:0016491	Molecular Function	oxidoreductase activity

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MAPQHQMKEK NALAMNQKIM NILREKEQAI QERKDAEAQT KAAIGARDEA FRQREEALVE 60 RDKALMERDN ARAALQYWEN AINFTMVGGN QHGLKRVHHP PYSQADIAEA LNADVRITDA 120 FPISSITADA IKPRQGKRSK EGKGIALKGS STQRKGKRVG EDLNVQVLSH AKKVRSKWDS 180 ADVCLNLVVF NGSTMPVPVC SCTGIPRHCY KWGNGGWQSS CCTTTLSMYP LPQIPHKRHA 240 RVSGRKMSGS VFTKLLSRLA AEGQDLSIPL DLKDYWAKHG TNRYITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010028658.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4 isoform X1
Refseq	XP_010028660.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4 isoform X2
Refseq	XP_018718766.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4 isoform X1
Refseq	XP_018718768.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4 isoform X1
Swissprot	Q8S8C6	1e-108	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A059ANB0	0.0	A0A059ANB0_EUCGR; Uncharacterized protein
STRING	XP_010028658.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-111	basic pentacysteine 4