PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047617.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 303aa    MW: 33667.1 Da    PI: 8.5529
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047617.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed +lvd+++  G g W+  +++ g++R++k+c++rw++yl
     EcC047617.10 14 RGAWTAQEDRILVDYIQSQGEGGWRNLPKKAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding52.31.3e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E+el+++++++lG++ W++Ia +++ gRt++++k++w++
     EcC047617.10  67 RGNITADEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.007961IPR017930Myb domain
SuperFamilySSF466893.26E-2811108IPR009057Homeodomain-like
SMARTSM007173.0E-111363IPR001005SANT/Myb domain
PfamPF002493.2E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-221568IPR009057Homeodomain-like
CDDcd001672.00E-81661No hitNo description
PROSITE profilePS5129424.86362116IPR017930Myb domain
SMARTSM007177.4E-1666114IPR001005SANT/Myb domain
PfamPF002499.9E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2569117IPR009057Homeodomain-like
CDDcd001676.19E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRSPCCAKV GLNRGAWTAQ EDRILVDYIQ SQGEGGWRNL PKKAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TADEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT IVSKKVKHQP  120
KPSKETKLTK SKVIAMSRPA TEVVRTKALK CSRVLFLNPP QASPQVMQQQ QHRQADTDPA  180
TQTNAMPVVN SKNADGKVPC LAGGEDHLAT DFDFSEIDLS EFLNSDLSDK FRCFDGCNYG  240
SYNNTSLTSN SSSEQAMMFS EEMVQSWNLG GCAQDQANVG SNVQSLSPLL DCDKGEWLAS  300
GVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049529.10.0PREDICTED: myb-related protein Zm38
SwissprotQ9S9K92e-63MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A059CVE90.0A0A059CVE9_EUCGR; Uncharacterized protein
STRINGXP_010049529.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-65myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]