PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC047434.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 90aa MW: 10303.6 Da PI: 9.5044 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.1 | 1.2e-06 | 17 | 58 | 14 | 54 |
HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 d+i + ++Lr++lP+ + + +s K+ + +L++++++Ik+L EcC047434.60 17 DQITDLVSKLRQHLPEiRDRRRSDKVPASKVLQETCNHIKNL 58 6899999*********988999******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.455 | 3 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-8 | 4 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-7 | 17 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0045454 | Biological Process | cell redox homeostasis | ||||
GO:0015935 | Cellular Component | small ribosomal subunit | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome | ||||
GO:0004252 | Molecular Function | serine-type endopeptidase activity | ||||
GO:0009055 | Molecular Function | electron carrier activity | ||||
GO:0015035 | Molecular Function | protein disulfide oxidoreductase activity | ||||
GO:0019843 | Molecular Function | rRNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MSSRRSRQSS SSRISDDQIT DLVSKLRQHL PEIRDRRRSD KVPASKVLQE TCNHIKNLHQ 60 EVDNLSERLS QLLSTIDPDS PEAAIIRSLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029295.1 | 3e-56 | PREDICTED: transcription factor PRE5 | ||||
Swissprot | Q9LJX1 | 2e-42 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A059AR63 | 7e-55 | A0A059AR63_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029295.1 | 1e-55 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 9e-36 | bHLH family protein |