PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047434.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 386aa    MW: 43017.8 Da    PI: 7.9893
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047434.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36.2e-53141411128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                   + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t sg+Wkatg+d++++s+ +
  EcC047434.20  14 MLPGFRFHPTDEELVGFYLKRKIQQRSLPI-ELIKQVDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGSGFWKATGTDRPIYSSdG 109
                   579***************************.89***************8888999***************************************956 PP

           NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  EcC047434.20 110 TKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 141
                   667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5812172IPR003441NAC domain
PROSITE profilePS5100557.11814172IPR003441NAC domain
PfamPF023656.4E-2616141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0006508Biological Processproteolysis
GO:0045454Biological Processcell redox homeostasis
GO:0015935Cellular Componentsmall ribosomal subunit
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0009055Molecular Functionelectron carrier activity
GO:0015035Molecular Functionprotein disulfide oxidoreductase activity
GO:0019843Molecular FunctionrRNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEDKSDVEKV DDVMLPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKYDPWDLP  60
KLATTGEKEW YFYCPRDRKY RNSARPNRVT GSGFWKATGT DRPIYSSDGT KCIGLKKSLV  120
FYRGRAAKGM KTDWMMHEFR LPSITDSAPP KKFLDKNIAP NDSWAICRIF KKTNSMAQRA  180
LSYSWVTQLP EPIGSDLLGH GAQYSQFSSE NISCTTEIGS AINHPNSASF NSMDVQSYRP  240
MLYPPVSKAS TLTISNSDLP SAFVFSPLDM PPGPTKCTAD TSPMLMCPAL MGGEVNKASE  300
SISFEGSHQF SGFSIGLPHE MQGNIGGEEE AAGLKKNPGI VHANNQWPAT TRSMGFPFSL  360
PSNMPWDSPP CPSEMSTAFS TNKCYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-531617517171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029299.10.0PREDICTED: protein FEZ
SwissprotQ9ZVH01e-103FEZ_ARATH; Protein FEZ
TrEMBLA0A059ARZ00.0A0A059ARZ0_EUCGR; Uncharacterized protein
STRINGXP_010029299.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-102NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]