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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC047312.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 386aa MW: 43532.3 Da PI: 7.5326 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.7 | 1.1e-53 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +ppGfrFhPtdeel+++yLkkk++ +k+++ evi+evd++k+ePw+L++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + EcC047312.10 8 VPPGFRFHPTDEELLQYYLKKKISFQKFDM-EVIREVDLNKMEPWELQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN 103 69****************************.99**************964444222455*************************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++++g++ktLvfy+grap+g+ktdW+mheyrle EcC047312.10 104 -THKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 .8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-61 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.27 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-28 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009617 | Biological Process | response to bacterium | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity | ||||
GO:0071949 | Molecular Function | FAD binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MASSSGGVPP GFRFHPTDEE LLQYYLKKKI SFQKFDMEVI REVDLNKMEP WELQERCKIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNTHKKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDGD DPQGNPNEDG WVVCRVFKKK NLFKIAGNDN GGQTSAGSDQ 180 NHHHQQLSIN STSNTTAHQP RSFMHRDSSL YLHSNHLSPS TAFELNKPEL ALHYSSHHLP 240 QYSLFPSSQG LIPTPKPIGY HDYTALQSAD TVAPPVMLKQ LMSSNTRDQC ESGSDSFRYQ 300 NCDQGLEVGT CEATQEQMVG ARDEAGMSDW GMLSVTSGAH NQLGNHNEGD SGSKGVRFED 360 GTAATSLHPI NHLSLRGEMD FWGYGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-52 | 8 | 161 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 8 | 161 | 17 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010063731.1 | 0.0 | PREDICTED: protein BEARSKIN2 | ||||
Swissprot | Q9SV87 | 1e-145 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A059BXQ4 | 0.0 | A0A059BXQ4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010063731.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-147 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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