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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC047289.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 181aa MW: 20750.1 Da PI: 5.692 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 61.9 | 1.2e-19 | 121 | 181 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKY q + +sefpr+YY C+++ gC+++k+v++ ++dp + ++ +g+H+++ EcC047289.10 121 YDGYSWRKYAQEAILKSEFPRNYYGCSHKfdqGCQATKQVQKIKDDPPIYRTICQGHHTCK 181 5***************************9999**************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-20 | 114 | 181 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.19E-19 | 115 | 181 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.5 | 115 | 181 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-21 | 120 | 181 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-20 | 122 | 181 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MERFAWPQNL STSRKRMIEE ILRAQKSVTT LLDLFSAQSQ AGNNTQLPLS AEDLLEDLKE 60 SFANSLSLLG MAESDEVSQV PTKSCVRFED SDEESTSTPV PRQLRGTSNT WTRLDDHEFV 120 YDGYSWRKYA QEAILKSEFP RNYYGCSHKF DQGCQATKQV QKIKDDPPIY RTICQGHHTC 180 K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-15 | 122 | 181 | 10 | 69 | OsWRKY45 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018727312.1 | 1e-132 | PREDICTED: probable WRKY transcription factor 62 isoform X3 | ||||
STRING | XP_010043355.1 | 1e-128 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 7e-27 | WRKY DNA-binding protein 38 |