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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC047271.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 245aa MW: 27397.5 Da PI: 5.9972 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.5 | 9.5e-11 | 177 | 219 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT eE+e+++++ + +G+g+Wk+I++ + ++t+ ++ s+ q EcC047271.10 177 WTREEHERFLRGMNIYGKGDWKRISANVIFTKTPSELASHSQE 219 ****************************9889****9999776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.7 | 64 | 123 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.865 | 169 | 225 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.08E-11 | 172 | 224 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-7 | 173 | 223 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.7E-10 | 173 | 223 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 7.4E-8 | 174 | 217 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-8 | 177 | 218 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.26E-8 | 177 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MAAPTLPSLM ANFLLTTVAL GFRTHMHDAL SCLVRAFPFL LKIYSRKAAP KASVDHHDGG 60 GGGGGGGWTF EENKRFENAL AIFSLNEDDS SATFDGFPER AAPFFPEKSV QQIRSHLEAL 120 LHDLDLIESG EIPFPEQWTI EEDEGKRKRE DGDAGSSGSS LSLPLLSSSS ADRRHIWTRE 180 EHERFLRGMN IYGKGDWKRI SANVIFTKTP SELASHSQEH FSRRDRPTSP KRPRIIYDVD 240 SDDEP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010030834.1 | 1e-140 | PREDICTED: transcription factor DIVARICATA | ||||
TrEMBL | A0A059ARM5 | 1e-113 | A0A059ARM5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010030834.1 | 1e-140 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20625 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-27 | MYB family protein |