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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC047148.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | CPP | ||||||||
Protein Properties | Length: 681aa MW: 74551.5 Da PI: 5.3839 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51.1 | 2.7e-16 | 384 | 422 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk EcC047148.10 384 TCKRCNCKKSKCLKLYCECFAAGVYCIEPCACQDCFNKP 422 689**********************************96 PP | |||||||
2 | TCR | 50.6 | 3.7e-16 | 469 | 507 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN EcC047148.10 469 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNA 507 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.2E-18 | 383 | 424 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.799 | 384 | 509 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.8E-12 | 386 | 421 | IPR005172 | CRC domain |
SMART | SM01114 | 1.0E-16 | 469 | 510 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-11 | 471 | 507 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
DSPVFNYINS LSPIKPVKSI RITQAFSSLT FGSLPSIFTS PHVSSSHKES RFLRSHQDSD 60 PSNIGTSCKD ENKIPTAERN VSDVAQLAEN ESELQENFDI LVPIGESSVE PLDEHQEFAL 120 DLPQSLKYDC GSPNSDPTPC STAADCTVSK SDAPVVEKNS QIDLPDGRLH QEGTSQQKND 180 TGCGWESMAL ESTDLLIFSS PNDAAAFRGL IQRSPDVEVG YFTSMVSNFP ENEVSEELKR 240 QLLYQLTFNE QLEAEEPSCQ PVDPSEQKDT NTLPNGVAIS NLDNHTGTYL SVNMDNEAGA 300 HIPFANKPIS DLPRGMRRRC LDFEMAGTQQ KCLDGGSGGN SSPLLKSDEN NIPKNKQLVV 360 VKGGGDSSRC IVPRRMENGG ESETCKRCNC KKSKCLKLYC ECFAAGVYCI EPCACQDCFN 420 KPIHEDTVLA TRKQIESRNP LAFAPKVIRS SESASEYGED SSKTPASARH KRGCNCKKSS 480 CLKKYCECYQ GGVGCSINCR CEGCKNAFGT KDGSALRGPD CEEEEETEKC EKNKAEKIPW 540 KMENENNDEL NLASALPSTP SGFRRPLVQL AFPSKLKQPR SSFVTIGSSY ALHSSQKMGK 600 PDLLLPPPPK FEKLPLTNME DEIPEILCSS STPTATIKST SPNSKRVSPP HSDFGTSPNL 660 RSGRRLILQS IPSFPSLTPQ H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-18 | 388 | 506 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 6e-18 | 388 | 506 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00433 | DAP | Transfer from AT4G14770 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034650.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A059D0A8 | 0.0 | A0A059D0A8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034650.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1467 | 28 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-138 | TESMIN/TSO1-like CXC 2 |