PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC047086.40

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 857aa MW: 96542.8 Da PI: 6.735

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC047086.40	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.8	2.7e-16	64	137	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA++vGFs+++ + ++ + +g i++ +fvCs+e ++++ ++ C+a+l+++++++++w+v+k+++eHnH+ EcC047086.40 64 SFYDTYARHVGFSTQVGQFSRCRPDGPIVSWDFVCSREVLKRKNIES--------------CNAMLRIERKDSDNWVVSKFVEEHNHS 137 5*************************************9998877..............************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-13	64	137	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-29	271	363	IPR018289	MULE transposase domain
Pfam	PF04434	8.5E-11	544	582	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.93	548	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-7	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009506	Cellular Component	plasmodesma
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003824	Molecular Function	catalytic activity
GO:0005509	Molecular Function	calcium ion binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence Send to blast
MEVESVDKNG VPRGHRVARN VVHDQGDEST SDTCSDRETT TSGYDIRAKP CVGMQFESEE 60 AARSFYDTYA RHVGFSTQVG QFSRCRPDGP IVSWDFVCSR EVLKRKNIES CNAMLRIERK 120 DSDNWVVSKF VEEHNHSTAT PSKVHHLRPS RHFASATKNV SEPLDAISDA HASLDGNHIS 180 IEPNRGGRNI SPVESNHLAR NIGSINYMRP STQKRNLGRD AQNLLDYFKK MQAENPGFYY 240 AIQLDDDNRM TNVFWADARS RAAYTYFGDA VVFDTMYRPN QYQVPLAPFT GVNNHGQMIL 300 FGCALLLDES ESSFAWLFRT WLSAVNDRPP VSITTDQDRA IQAAVAQVLP QTRHCICKWH 360 ILREGQERLA HIYLAHPSFY RDLYSCINFA ETIEDFEASW VALLDRHGLQ KNEWLQAVYN 420 ARKQWAPVYF RDTFFAAISS NQGVSSFFDG YVNQQTTVPL FFKQYERALE SSLEKEIEAD 480 YDTMGTTPVL KTPSPMEQQA ANLYSKKIFA KFQEELVETF VYTANKIEDD GVINKYRVAK 540 YEHDDKAFIV TLNVSGMKAS CSCQMFEYSG VLCRHILTVF TVTNVLTLPS HYILKRWTSN 600 AKSLLGSEEQ NSDPHGIETL TSRFNSLCRE AIQYAEEGAI AMETYNAAMS ALKEGIRKIA 660 SVKKGIPKVA LPSSQSSGSN EDSSKKTSSS VPEMFPALWP WQGAYPPRFN LNNNGVPVAD 720 LTQPSLAPVS IQHDNGTLDD TVVLTCFKSM TWVIESSTAA LAGKIAVVNL KLQDYGKIPC 780 GETEVQFRLT RVTLEPMLRS MAYISQQLSS PTNKVAVINL KLQDTKTSTG ETEVKFQVSR 840 DTLGLMLRSM AYIREQL

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence Send to blast

MEVESVDKNG VPRGHRVARN VVHDQGDEST SDTCSDRETT TSGYDIRAKP CVGMQFESEE  60
AARSFYDTYA RHVGFSTQVG QFSRCRPDGP IVSWDFVCSR EVLKRKNIES CNAMLRIERK  120
DSDNWVVSKF VEEHNHSTAT PSKVHHLRPS RHFASATKNV SEPLDAISDA HASLDGNHIS  180
IEPNRGGRNI SPVESNHLAR NIGSINYMRP STQKRNLGRD AQNLLDYFKK MQAENPGFYY  240
AIQLDDDNRM TNVFWADARS RAAYTYFGDA VVFDTMYRPN QYQVPLAPFT GVNNHGQMIL  300
FGCALLLDES ESSFAWLFRT WLSAVNDRPP VSITTDQDRA IQAAVAQVLP QTRHCICKWH  360
ILREGQERLA HIYLAHPSFY RDLYSCINFA ETIEDFEASW VALLDRHGLQ KNEWLQAVYN  420
ARKQWAPVYF RDTFFAAISS NQGVSSFFDG YVNQQTTVPL FFKQYERALE SSLEKEIEAD  480
YDTMGTTPVL KTPSPMEQQA ANLYSKKIFA KFQEELVETF VYTANKIEDD GVINKYRVAK  540
YEHDDKAFIV TLNVSGMKAS CSCQMFEYSG VLCRHILTVF TVTNVLTLPS HYILKRWTSN  600
AKSLLGSEEQ NSDPHGIETL TSRFNSLCRE AIQYAEEGAI AMETYNAAMS ALKEGIRKIA  660
SVKKGIPKVA LPSSQSSGSN EDSSKKTSSS VPEMFPALWP WQGAYPPRFN LNNNGVPVAD  720
LTQPSLAPVS IQHDNGTLDD TVVLTCFKSM TWVIESSTAA LAGKIAVVNL KLQDYGKIPC  780
GETEVQFRLT RVTLEPMLRS MAYISQQLSS PTNKVAVINL KLQDTKTSTG ETEVKFQVSR  840
DTLGLMLRSM AYIREQL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010067068.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A059BGV7	0.0	A0A059BGV7_EUCGR; Uncharacterized protein
STRING	XP_010067068.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]