PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EcC046149.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GeBP

Protein Properties

Length: 288aa MW: 32286.7 Da PI: 7.9623

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC046149.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	101	1e-31	76	170	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +fq++w ++Dei+lLqG+id+ ++g++p+++++afy+ vk+ + ++++sql +K+r +KkK+++++ k k g++ +fs++h+ kifelsk iWg EcC046149.20 76 AFQKIWGDDDEITLLQGIIDY-CEKGMDPFSNVSAFYHDVKGLLREDFTESQLANKVRVFKKKYRNNKGKGKVGEDRVFSNSHEGKIFELSKTIWG 170 59*****************.899********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.6E-26	77	170	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MSSKRKVLVK EKLPAAKSDN EQKNNEESPS QPKPAPPRPQ KSAPSLKKLK TVPSTSLKQV 60 EVEKLGHAGE ESKKLAFQKI WGDDDEITLL QGIIDYCEKG MDPFSNVSAF YHDVKGLLRE 120 DFTESQLANK VRVFKKKYRN NKGKGKVGED RVFSNSHEGK IFELSKTIWG VEMRGNATSG 180 REEIGVTIEN KKTDGAGMFV APPWSKSEAS KSNDSQELLD DISHMCRIGL DEGSLNQGLA 240 LLEPSKRAEL NERWSKLFCA EMQIVAERCA VIEDQLKLIL EAYYHSTE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010039675.1	0.0	PREDICTED: probable transcription factor At1g11510
STRING	XP_010039675.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25210.1	7e-19	DNA-binding storekeeper protein-related transcriptional regulator