PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045700.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 360aa    MW: 40299.4 Da    PI: 5.8514
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045700.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.1e-29131190258
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                   dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+v+eitY+g+H++
  EcC045700.30 131 DDGYSWRKYGQKDILGATYPRSYYRCTYRntqNCWATKQVQRSDEDPTVFEITYRGTHTC 190
                   8***************************98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-28125191IPR003657WRKY domain
PROSITE profilePS5081122.056125188IPR003657WRKY domain
SuperFamilySSF1182906.02E-26129191IPR003657WRKY domain
SMARTSM007746.4E-40130192IPR003657WRKY domain
PfamPF031068.5E-27131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006269Biological ProcessDNA replication, synthesis of RNA primer
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003896Molecular FunctionDNA primase activity
GO:0004650Molecular Functionpolygalacturonase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDGGWSFEQK TLISELIQGM EFAKQLRGHL TSAPSTEARD VLMQGILSSY EKALLILQWG  60
GPMPQSQPVV AVSGIPESPL SVNGSPRSDE FEKGIGDHQQ NRDISKKRKL MPKWTDQVRI  120
SSENGLEGPH DDGYSWRKYG QKDILGATYP RSYYRCTYRN TQNCWATKQV QRSDEDPTVF  180
EITYRGTHTC GNSGPSVPSP ASSEKQEQKQ INHQSNHHQH LQQQQSQEML SKFRAGLRVD  240
TNNLDNNETA YHPFSFPSAS VGLLQIEHCS SSTLTNVNSS LFGSFSSTFF SPSTPESCYF  300
SMHQANDSGQ AHNMQHLESD HTEIISTNTS STNSPIMDLE FSLDQVGIDP NFPFDTSFFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-18131190968OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055851.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A059C2030.0A0A059C203_EUCGR; Uncharacterized protein
STRINGXP_010055851.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.19e-72WRKY family protein