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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC045673.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 313aa MW: 35157 Da PI: 9.1941 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.5 | 1.4e-28 | 237 | 296 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK +++++pr+Y++C++a +C vkkkv+rsaed++v++ tYegeHnh+ EcC045673.10 237 VKDGHQWRKYGQKITRDNPCPRAYFKCAHApSCLVKKKVQRSAEDQSVIVATYEGEHNHP 296 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 25.04 | 232 | 298 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-24 | 235 | 297 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.6E-26 | 236 | 297 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-33 | 237 | 297 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-24 | 238 | 296 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGIEALTALL QLSSHLYQSP SFLPRSAKPA VDFLGHGLYN EEEVRFCLVV LRRLPPLRLV 60 LKNKTRTRTR KPTLCLRRSM DSSSWITSSL DLSIRPLQVS EEPPTKVVES DFMELGRTGS 120 GNKDESGALL EELNRLAAEN KKLSQMLMTV CENYNALRNH VIEIVSKNAE REVSPCKKRK 180 SESSTNDNGN EMVVNRASES SSTDDDDLYK KPREETIKAK ITRVYYRTEG PGTSLIVKDG 240 HQWRKYGQKI TRDNPCPRAY FKCAHAPSCL VKKKVQRSAE DQSVIVATYE GEHNHPSSSL 300 LEATCGSNAR ATL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-18 | 236 | 295 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-18 | 236 | 295 | 16 | 74 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034033.1 | 1e-170 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-73 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A059AJI7 | 1e-169 | A0A059AJI7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034033.1 | 1e-170 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-65 | WRKY DNA-binding protein 40 |