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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC045515.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 160aa MW: 17804.6 Da PI: 10.0756 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.9 | 4.9e-13 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + k R+ ++k++w++ EcC045515.10 5 KQKWTAEEEAALKAGVIKHGAGKWRTILTDLEfkeilKMRSNVDLKDKWRN 55 79************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.448 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.09E-15 | 2 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-12 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-9 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.18E-17 | 6 | 57 | No hit | No description |
PROSITE profile | PS51504 | 12.412 | 122 | 160 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 1.74E-5 | 125 | 156 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.5E-5 | 126 | 153 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043047 | Molecular Function | single-stranded telomeric DNA binding | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILTDLEFKEI LKMRSNVDLK DKWRNINVTA 60 IWGSRQKARL ALKKNLLTPK HDSNTLALAS ARNDEEILDA TPLAVSGETI NNANPKERMK 120 SLCSRLDNLI IEALTNLKDP SGSDRAAIAA YIEVHLFVMM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00626 | PBM | Transfer from PK06103.1 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010023317.1 | 1e-101 | PREDICTED: telomere repeat-binding factor 1 isoform X2 | ||||
Swissprot | Q8VWK4 | 3e-51 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A059B0L9 | 2e-99 | A0A059B0L9_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059B1M3 | 2e-99 | A0A059B1M3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010023316.1 | 1e-100 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3809 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 1e-53 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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