PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045470.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 240aa    MW: 27536.3 Da    PI: 10.0257
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045470.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.14e-41111441128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                   lp+GfrF+Ptdeelv++yLk k+ g+k+ + ++i+evd++++ PwdLp k     ++k++ +ew+fFs+ ++ky+++kr++r+ + g Wk tgk+++
  EcC045470.20  11 LPVGFRFRPTDEELVNQYLKLKTLGNKTVE-QIIPEVDVHQLPPWDLPgKinelsRIKSDGDEWFFFSRLQNKYPQSKRARRTNDYGSWKPTGKTHK 106
                   79************************9766.89***************54788887778899*********************************** PP

           NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   + ++ k+++ glkk+Lvf k ++pk  +t+Wv+hey++
  EcC045470.20 107 IRTQdKKNTLGLKKILVFKKRHSPKNAHTKWVLHEYSI 144
                   **9967778***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-437158IPR003441NAC domain
PROSITE profilePS5100543.74111159IPR003441NAC domain
PfamPF023654.2E-2212144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016020Cellular Componentmembrane
GO:0048471Cellular Componentperinuclear region of cytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0004842Molecular Functionubiquitin-protein transferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MESIETLLVD LPVGFRFRPT DEELVNQYLK LKTLGNKTVE QIIPEVDVHQ LPPWDLPGKI  60
NELSRIKSDG DEWFFFSRLQ NKYPQSKRAR RTNDYGSWKP TGKTHKIRTQ DKKNTLGLKK  120
ILVFKKRHSP KNAHTKWVLH EYSILNDQSD FVLYRLKKNP DEKGMKNSKT QKTNTGISIM  180
PQESSTSNPN LSDEVNNTSI PIMPQEGSRS SQNSPDEVNN TSCSNTLVIA KSMVPEEIPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-28916313174Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064391.11e-171PREDICTED: protein NTM1-like 9
RefseqXP_010064501.11e-171PREDICTED: protein NTM1-like 9
RefseqXP_018725712.11e-171PREDICTED: protein NTM1-like 9
TrEMBLA0A059DC641e-169A0A059DC64_EUCGR; Uncharacterized protein
STRINGXP_010064391.11e-170(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.34e-43NAC transcription factor-like 9