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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC045470.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 27872.7 Da PI: 7.815 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.5 | 1.4e-45 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFh tdeel+ +yLk+k+ g++ + ++i+e+di+++ePw+Lp+ +++ ++ke++fF++ ++ky+++kr+ r+tk+gyWk tgk+++++s EcC045470.10 4 LPPGFRFHATDEELLIHYLKPKILGRPgERYYDMIPEIDICEFEPWQLPAmfCHRFNSKELFFFCRVKRKYSNSKRSDRTTKAGYWKVTGKERTIVS 100 79*************************6566788***************5345556889************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++e +g+kktLvfy+gr pkg++t+Wv hey+l EcC045470.10 101 EdTDEPIGIKKTLVFYTGRVPKGKRTNWVSHEYQL 135 967788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-49 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.916 | 4 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-23 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0048471 | Cellular Component | perinuclear region of cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MRALPPGFRF HATDEELLIH YLKPKILGRP GERYYDMIPE IDICEFEPWQ LPAMFCHRFN 60 SKELFFFCRV KRKYSNSKRS DRTTKAGYWK VTGKERTIVS EDTDEPIGIK KTLVFYTGRV 120 PKGKRTNWVS HEYQLSPKCL GHNEYEMLPY VACRIKNKKE KKLMMGHAPT VSPEVYSSSP 180 HAPAVSPEVC SSSPHAYASN VSETPVNQEG DYSSFCNSPS DEVADNQEAV DAQPEVREAH 240 FIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-37 | 3 | 159 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-37 | 3 | 159 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-37 | 3 | 159 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-37 | 3 | 159 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-37 | 3 | 159 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-37 | 3 | 159 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-37 | 3 | 159 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-37 | 3 | 159 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-37 | 3 | 159 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-37 | 3 | 159 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-37 | 3 | 159 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-37 | 3 | 159 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-37 | 3 | 159 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-37 | 3 | 159 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010064990.1 | 1e-159 | PREDICTED: protein NTM1-like 9 | ||||
TrEMBL | A0A059DCT8 | 1e-162 | A0A059DCT8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065386.1 | 1e-162 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-50 | NAC transcription factor-like 9 |