PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045469.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 467aa    MW: 52496.4 Da    PI: 5.8472
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045469.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.61.4e-37291773128
           NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k........................kvkaeekewyfFskrdkkyatgkrk 74 
                   pG+ F P+d+el+  yL++k++g++l+    + ++++yk+ P++L  +                         +  +ekewyfF++rd+ky++gkr+
  EcC045469.20  29 PGMAFYPHDHELI-GYLHRKLSGQPLPPRLPVIDLNVYKHTPQQLSgQrlhlyslfynddmlvlsctlqelnGCGVREKEWYFFTTRDRKYKNGKRP 124
                   9************.9**********999667999***********854899********99999998776653444899****************** PP

           NAM  75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   nr + +g+Wkatg+++e+++ +g+++g k++Lv+y+g+ ++g+kt W+mhe+++
  EcC045469.20 125 NREAGDGFWKATGSNEEIVH-DGQVIGWKRSLVYYHGKPQNGVKTGWIMHEFTA 177
                   ********************.99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-3727213IPR003441NAC domain
PROSITE profilePS5100537.29527213IPR003441NAC domain
PfamPF023652.9E-1929176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEMPERRESC GRGCERPMPD ASSVKRQRPG MAFYPHDHEL IGYLHRKLSG QPLPPRLPVI  60
DLNVYKHTPQ QLSGQRLHLY SLFYNDDMLV LSCTLQELNG CGVREKEWYF FTTRDRKYKN  120
GKRPNREAGD GFWKATGSNE EIVHDGQVIG WKRSLVYYHG KPQNGVKTGW IMHEFTAKDA  180
DYNDDDNRYN PNGTKGENDM QLDGYVICKI HLKRSKSELA NRKEEGGETG QKKRKNMAST  240
EGGRKAPHKD LGNRDFHTEN SSPLPGLNDG APITPWDQAS IAELLSLCSS VPVPDQKQQP  300
LQAEKEGTIC FEHADTPDYT VVNAMPLDMF NLCETREQQQ QTANHGAINY SPPEVPVDSE  360
AWPPHMPFIS SAPGQLQKAT NQAVGIDFNP EKNLSDNSIL NGANAVGGLS LDRLHSSAFP  420
ADFGDDCLDN ESSLLRYFDY NDLEVTLDMN CTRDCTGHES CIGSRNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-312921822173NAC domain-containing protein 19
3swm_B2e-312921822173NAC domain-containing protein 19
3swm_C2e-312921822173NAC domain-containing protein 19
3swm_D2e-312921822173NAC domain-containing protein 19
3swp_A2e-312921822173NAC domain-containing protein 19
3swp_B2e-312921822173NAC domain-containing protein 19
3swp_C2e-312921822173NAC domain-containing protein 19
3swp_D2e-312921822173NAC domain-containing protein 19
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-34NAC domain containing protein 32