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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC045323.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 256aa MW: 28836.6 Da PI: 9.3244 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 81.1 | 1.2e-25 | 99 | 154 | 4 | 58 |
SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 4 gynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 y+WrKYGqK+ ++++ p +Y++C++a gCpvkkkv+r+ +dp+v++ tYegeHnh EcC045323.20 99 DYHWRKYGQKVRRDNPSPTAYFKCSFApGCPVKKKVQRTVDDPSVLVATYEGEHNH 154 59************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 25.339 | 91 | 157 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-24 | 94 | 156 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-22 | 96 | 155 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-26 | 97 | 156 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-21 | 100 | 154 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
AGALVKEYHR VSHENRNLTE MLTLMHESYN VLHNHLIVLR NKSELGARRK RKHEANVTAE 60 SCSYEEDQIF KTPKDSFKPK ISKIHSQTDA PDISVVVKDY HWRKYGQKVR RDNPSPTAYF 120 KCSFAPGCPV KKKVQRTVDD PSVLVATYEG EHNHLSPCQL AISLGSDKQG LNLGAPPIPL 180 PSKSTSSSPR STPDLIRLGF DTLSAKRGQE TEEAAAFQQS LEEQMASPFK RDPNFTAAFT 240 AVISGKIFDQ ARMEWW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-17 | 92 | 157 | 13 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-17 | 92 | 157 | 13 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010050821.1 | 1e-151 | PREDICTED: probable WRKY transcription factor 40 | ||||
TrEMBL | A0A059CRL5 | 1e-126 | A0A059CRL5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010050821.1 | 1e-150 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 3e-61 | WRKY DNA-binding protein 40 |