PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045276.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 573aa    MW: 66827.1 Da    PI: 7.6213
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045276.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.92.2e-2025109391
          FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   Y +YA   GF vrk ++ k+ r+geit+rtf C++eg++ +++++  +++ +rae r+gC a++k k + +g++ev++ ++eHnH+++p
  EcC045276.30  25 YVAYAIGKGFGVRKGHTVKN-RKGEITRRTFLCNCEGHSITSSDQ--EKKFERAEVRCGCPAHIKFKVD-NGVYEVIEYVSEHNHAFVP 109
                   99**************9999.7788*************9998877..9999*****************9.***************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-1825109IPR004330FAR1 DNA binding domain
PfamPF105514.6E-34230324IPR018289MULE transposase domain
PROSITE profilePS509669.322507543IPR007527Zinc finger, SWIM-type
PfamPF044346.4E-5515540IPR007527Zinc finger, SWIM-type
SMARTSM005750.0034518545IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0006629Biological Processlipid metabolic process
GO:0006950Biological Processresponse to stress
GO:0005524Molecular FunctionATP binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0008270Molecular Functionzinc ion binding
GO:0051082Molecular Functionunfolded protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
RDMENDFEFA IGMVFSNEDE AYYKYVAYAI GKGFGVRKGH TVKNRKGEIT RRTFLCNCEG  60
HSITSSDQEK KFERAEVRCG CPAHIKFKVD NGVYEVIEYV SEHNHAFVPE DQKHMIRCGR  120
MISDTCKGVL SGMMKAGIGG TMAYKFLANE AGGSKNLGFI LRDCQNFLQT ESNKIMEGGD  180
CQQLLNHFHR MQMENPMFFY AVQVDQEGRM TNLFWRDSLS KFDYDCFGDV LVFDSTYRTN  240
RYSLICAPFV GVNHHWKNTV FGCAFLLDET AESFIWLFNV FLESMGDKAP KTIFTDQDQA  300
MAKAIRVVFP NSQHRLCTWH IIQNAIKNIP QLYHKLNFRD KYFFRLMYRC KSEDEFESIW  360
MEMEKEWDTQ NNNWLQRLYG LRHKWSSAFG RDVFSCGIRS SQRSESTNNV FQHFSKKTSS  420
LIKFVYYYED QLKHMREIEI QDDYKSRGKL KLQVSSNELL DHAAAVYTHT ILEKFSEELM  480
ECLSVDVSGT TFDGSIYSYI IRCRHEYIVR FNPVELSISC ECKLFESKGW LCRHALYVLN  540
QNKSIVKSIP SPYILKRWTK GAKEGIVTVN DES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018721386.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_018721390.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_018721391.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_018721396.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_018721404.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_018721405.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_018721410.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_018721413.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_018721416.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBLA0A059CXY90.0A0A059CXY9_EUCGR; Uncharacterized protein
STRINGXP_010027018.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-115FAR1-related sequence 5