PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045224.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 235aa    MW: 26421.6 Da    PI: 5.8647
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045224.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.2e-11167209446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      WT eE+e+++++ +++G+g+Wk+I++ +  ++t+ ++ s+ q 
     EcC045224.10 167 WTREEHERFLRGMNMYGKGDWKRISANVVFTKTPSELASHSQE 209
                      *****************************889*******9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.953112IPR001005SANT/Myb domain
PROSITE profilePS5129412.691159215IPR017930Myb domain
SuperFamilySSF466897.03E-12162214IPR009057Homeodomain-like
SMARTSM007179.6E-8163213IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.7E-11163213IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.0E-8164208IPR009057Homeodomain-like
PfamPF002493.9E-9167208IPR001005SANT/Myb domain
CDDcd001679.08E-8167206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAAPTLPSLM ANFLLTTVAL GFRTHMHDAL SCLVRAFPFL LKIYSRKAGG GGGGGGWTFE  60
ENKRFENALA IFSLNEDDSS ATFDGFPERA APFFPGKSVQ QIRLHLEALL HDLDLIESGE  120
IPFPEQWTID EEDEGKRKRE DGDVGSSGSS LSLPLLSSSP VDRRHIWTRE EHERFLRGMN  180
MYGKGDWKRI SANVVFTKTP SELASHSQEH FSRRDRPTSP KRPRIIYDVD SDDEP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030834.11e-146PREDICTED: transcription factor DIVARICATA
TrEMBLA0A059ARM51e-119A0A059ARM5_EUCGR; Uncharacterized protein
STRINGXP_010030834.11e-146(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2062545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-21MYB family protein