PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045028.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 93aa    MW: 10448.4 Da    PI: 7.5191
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045028.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.29.1e-107493221
                  --SS-EEEEEEE--TT-SS- CS
          WRKY  2 dDgynWrKYGqKevkgsefp 21
                  +D ++WrKYGqK++kgs++p
  EcC045028.10 74 SDSWAWRKYGQKPIKGSPYP 93
                  69****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-96593IPR003657WRKY domain
SuperFamilySSF1182902.09E-76993IPR003657WRKY domain
PROSITE profilePS5081112.1517493IPR003657WRKY domain
PfamPF031062.2E-57593IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MDRRFYTNPF VHDQEEDPEP EQGPDSPSSG DDSKVNASEP SQKRRKSVKK RVVSVPIEGD  60
PEGSKSKGEA YPPSDSWAWR KYGQKPIKGS PYP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720196.11e-59PREDICTED: probable WRKY transcription factor 69 isoform X2
SwissprotQ93WV54e-27WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLA0A059A2143e-58A0A059A214_EUCGR; Uncharacterized protein
STRINGXP_008455292.12e-31(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124781930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.26e-17WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]