PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045004.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 306aa    MW: 33705.3 Da    PI: 5.4388
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045004.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS84.51.7e-261333053176
          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   + L+e+A+a+ +g    a+++L rls   +p g++ q+l  +++ AL++r++      ++  pp ++    ++e+l +++ ++++sP+l +++l+aN
  EcC045004.10 133 QSLVEAATAIYEGRVDVASEILRRLSAVPNPMGNSEQKLMGCMLSALKSRVSP-----VDYPPPVAE--LFTEEHLLSVRSLYDMSPFLGLGFLAAN 222
                   78**************************************************9.....333332222..34899999******************** PP

          GRAS 100 qaIleavege...ervHiiDfdis...qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                    aIlea++++   +++H+i + i+   ++l  + L+   + R+ +++ +l+iT+v++ + + +e+l  +g+rL+++A++ gv++
  EcC045004.10 223 YAILEAASEQpstNKLHVIYLAIGweeECLDHLILFYMVSVRQaGNQSTLKITTVAD-SFNGEERLMMLGDRLSDLAARRGVRL 305
                   ********9999999********65559**************955667*********.55599****************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.177105306IPR005202Transcription factor GRAS
PfamPF035146.0E-24133305IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MERSAWPKNL SSSGKRAIQE LCGQNPKKLR DAFDAHSQTG DDPRQPLFAG DLVVRVLGSF  60
SSNTQSLSSG AESYEVFQVP SNAFVSSEVS EGSESIRSPL ESVKTPVRRL QRSPMESVNT  120
HVQRSPLSIL WEQSLVEAAT AIYEGRVDVA SEILRRLSAV PNPMGNSEQK LMGCMLSALK  180
SRVSPVDYPP PVAELFTEEH LLSVRSLYDM SPFLGLGFLA ANYAILEAAS EQPSTNKLHV  240
IYLAIGWEEE CLDHLILFYM VSVRQAGNQS TLKITTVADS FNGEERLMML GDRLSDLAAR  300
RGVRLV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039531.10.0PREDICTED: scarecrow-like protein 8
RefseqXP_018727339.10.0PREDICTED: scarecrow-like protein 8
TrEMBLA0A059DD353e-95A0A059DD35_EUCGR; Uncharacterized protein
STRINGXP_010039531.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.14e-31SCARECROW-like 8