PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC044038.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 197aa    MW: 21595.9 Da    PI: 9.2573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC044038.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-104690554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  h+++Er RR+ri +++ +L++l+P+ +      K + a++L + v+Y+k L
  EcC044038.60 46 HSIAERLRRERIAERIRQLQDLVPSvN------KTDRAAMLDEIVDYVKFL 90
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-1639101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2154190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1543101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-84690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-114796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MQFVLVGALC KVFHGQPVPN PVPAAPHPPA MRPRVRARRG QATDPHSIAE RLRRERIAER  60
IRQLQDLVPS VNKTDRAAML DEIVDYVKFL RLQVKVLSMS RLGAAGAVAP LVTDIPLSSV  120
EEEGGEGGRN QPAWEKWSND GTERQVAKLM EENVGAAMQF LQSKALCIMP ISLATAIYQT  180
QPPDTSSLVK SESNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15055RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038816.11e-134PREDICTED: transcription factor UNE12 isoform X2
SwissprotO227681e-100UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A059D3691e-132A0A059D369_EUCGR; Uncharacterized protein
STRINGXP_010038809.11e-132(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]