PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC043669.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 331aa    MW: 35053 Da    PI: 6.7912
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC043669.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.4e-21117167155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++++GVr+++ +g+W+AeIrdp++    +r++lg+fgtaeeAa  +++a+ +l+g
  EcC043669.10 117 KKFRGVRQRP-WGKWAAEIRDPKK---GTRVWLGTFGTAEEAALVYDNAAIQLRG 167
                   59********.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.26E-32117174No hitNo description
SMARTSM003801.4E-39118181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-30118175IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22118175IPR016177DNA-binding domain
PfamPF008475.2E-14118167IPR001471AP2/ERF domain
PROSITE profilePS5103223.406118175IPR001471AP2/ERF domain
PRINTSPR003672.0E-10119130IPR001471AP2/ERF domain
PRINTSPR003672.0E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MMPPVKFTEH CTHTTLVRPD HHLNSPKTRP EMNPKVLRIS YTDGDATDSS SDEEAELLPR  60
RRVKKFVHEI ALQSDGGDGN AGSGRAKAKR RKPSGNPGTP VSGGDLKASA GCCGGGKKFR  120
GVRQRPWGKW AAEIRDPKKG TRVWLGTFGT AEEAALVYDN AAIQLRGPDA LTNFSTPPAE  180
SMPPPPPPPP RPKNGVVPPL PPTAAAATAS SSSSVSGEGS SRRASSPTSV LRGVSGEEAD  240
SPMGEAAKES CVSENFPQPS ARSALDLYLP AETFDFQSSR SDLSGSFSGL YTGDDLLANL  300
GDDLGAGFGS PDWTFYDHVR DVGDILRLDP M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22116174362ATERF1
3gcc_A3e-22116174362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055834.10.0PREDICTED: ethylene-responsive transcription factor CRF2
TrEMBLA0A059C2B40.0A0A059C2B4_EUCGR; Uncharacterized protein
STRINGXP_010055834.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.19e-48cytokinin response factor 4