PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC043112.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 86aa MW: 9476.9 Da PI: 10.6508

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC043112.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.2	1.6e-16	13	49	5	41
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 n + r + f kR+ng++KKA E SvLC+++ +v++f EcC043112.30 13 NARARRIAFEKRKNGLMKKAREFSVLCGVDTCVVVFP 49 78899******************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.689	1	48	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-18	1	81	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.8E-12	1	67	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.34E-18	2	82	No hit	No description
PRINTS	PR00404	5.9E-8	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.8E-17	13	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-8	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MGRGKTPHGL VPNARARRIA FEKRKNGLMK KAREFSVLCG VDTCVVVFPE AVAAGGDRPT 60 APEVWPPDSG EARRIIERYR SAGREE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010023474.1	6e-53	PREDICTED: MADS-box transcription factor 4
TrEMBL	A0A059B0V5	1e-51	A0A059B0V5_EUCGR; Uncharacterized protein
STRING	XP_010023474.1	2e-52	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-18	M-type_MADS family protein