PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC042303.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 368aa    MW: 40407.1 Da    PI: 4.8957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC042303.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102943341055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  EcC042303.40 294 RKRRARINERLRILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 334
                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-13286349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-12289344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-11290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.10E-12293338No hitNo description
PfamPF000101.2E-7294334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0009507Cellular Componentchloroplast
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0019843Molecular FunctionrRNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDTLGASAYE EWDSVGLFAS TDLIDFTPYV LCQYPFSPER DFQIPYFSIN PQLNTDFAGM  60
SGSSHYPLVI PDSILQAVSQ ESSSFTGESH GHVASTCQGI GSNNHMPVAN EISPYFDDFS  120
DAFNTDVSIS NSFVSELSGT PMEEGACLKT MHSERRGSLG SNQPEDVSML LMQSQLKRRS  180
SRLDNIYAGA GNSSCIDALE NTKKRPRTSK NLREKIKGPR NVKKLLSDDT DGDESNIRPN  240
GSSTCSSEDS DSGELSGELT PPSKTSTTLA ENGNRGKINA SRGAATDPQS LYARKRRARI  300
NERLRILQNL IPNGTKVDIS TMLEEAVHYV KFLQLQIKLL SSDAMWMYAP LAYNGMDLNL  360
SQIILPQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018730811.10.0PREDICTED: transcription factor bHLH85-like
STRINGXP_010059844.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-49ROOT HAIR DEFECTIVE 6-LIKE 2