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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC042117.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 232aa MW: 25895.2 Da PI: 9.7996 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73.8 | 2.2e-23 | 190 | 231 | 1 | 42 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-S CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversa 42 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a EcC042117.10 190 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLA 231 59*************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-24 | 175 | 230 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-21 | 182 | 231 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.309 | 185 | 232 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.3E-17 | 190 | 232 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.3E-18 | 191 | 229 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSTTATSTQG MLSQAAAPTM LEDQNLPSQL GFYSIFPSSM GSLASCSSSL CFNQTLKSLF 60 TLPSSLVSPD PPSNSNNNNL TLITETLLSS TAPHKQRENL QTPSELLGGP QLLSLQRSTP 120 NLWAWGELSD QSSLVMRSSS GGGDHGDHYR DHHHHQSMGV SALKMKKIKG RRKVREPRFC 180 FKTMSDVDVL DDGYKWRKYG QKVVKNTQHP RSYYRCTQDN CRVKKRVERL AE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-17 | 181 | 231 | 8 | 58 | Probable WRKY transcription factor 4 |
2lex_A | 1e-17 | 181 | 231 | 8 | 58 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010027754.1 | 1e-173 | PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 3e-46 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A059AKP8 | 1e-172 | A0A059AKP8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010027754.1 | 1e-173 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6106 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 3e-44 | WRKY DNA-binding protein 13 |