PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EcC041421.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 74aa MW: 8255.62 Da PI: 10.3225

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC041421.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.2	5.9e-11	5	36	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +++WT+eE+e l+ +++++G g Wk I + EcC041421.10 5 KLKWTKEEEEALLAGIAKHGAGKWKNILKDPE 36 789************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.435	1	50	IPR017877	Myb-like domain
SuperFamily	SSF46689	2.94E-11	3	50	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-11	5	50	IPR009057	Homeodomain-like
Pfam	PF00249	7.1E-8	5	33	IPR001005	SANT/Myb domain
CDD	cd11660	5.28E-15	7	50	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MGNQKLKWTK EEEEALLAGI AKHGAGKWKN ILKDPEFAPA LVNRSNIDLK VALPSPFSLL 60 FFSELFGART RAFP

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010033761.1	3e-28	PREDICTED: telomere repeat-binding factor 4 isoform X1
Refseq	XP_010033763.1	3e-28	PREDICTED: telomere repeat-binding factor 4 isoform X2
Swissprot	F4IEY4	5e-23	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	A0A059AIS4	6e-27	A0A059AIS4_EUCGR; Uncharacterized protein
STRING	XP_010033761.1	1e-27	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16580	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.1	3e-25	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]