PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC041299.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 334aa    MW: 36165 Da    PI: 4.5133
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC041299.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35281192102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+++g++fvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++i+
  EcC041299.10  28 FLTKTYQLVDDPAVDDVISWNDDGSAFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKLVPDR---------WEFSNDCFRRGEKRLLCEIQ 115
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
  EcC041299.10 116 RRKV 119
                   **86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.5E-3819112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.59E-3524117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-5824117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-3228117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAPPPPPPLD QRGDSPAGEP QRSTPTPFLT KTYQLVDDPA VDDVISWNDD GSAFVVWNPT  60
VFARDLLPKY FKHNNFSSFV RQLNTYGFRK LVPDRWEFSN DCFRRGEKRL LCEIQRRKVS  120
PSPTAAAVAV VPDSVATLPT AIPTAMPVIS PSSSGDEQVM SSQHSSPPSA CGQNCTAEIM  180
DENERLRKEN AFLSRELTQM KSLCNNILSL MSGYAPNGRP QGTSSRPAAR ALDLMPVKRP  240
TGGSGGGGGG GGDYXEEEEE EEEEEDEEED GEGSPKLFGV ALGMKRGREI REGEVAMMSG  300
SDAMLRLQQP GSGGVKFEPS DGDQRAISFS SGIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-252812220125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061278.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ6Z9C82e-83HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A059DIV80.0A0A059DIV8_EUCGR; Uncharacterized protein
STRINGXP_010061278.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-81heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]