PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC040635.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 306aa    MW: 34270.4 Da    PI: 9.7218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC040635.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-182570147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G ++W++Ia++++ gR++k+c++rw++ 
     EcC040635.50 25 RGHWRPAEDEKLRQLVRQYGAHNWNAIAEKLQ-GRSGKSCRLRWFNQ 70
                     899*****************************.***********996 PP
2Myb_DNA-binding60.53.6e-1977120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T++E+e+l+ a++ +G++ W++Iar ++ gRt++++k++w+ 
     EcC040635.50  77 RRPFTEDEEERLLAAHHVHGNR-WALIARLFP-GRTDNSVKNHWHV 120
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9452071IPR017930Myb domain
SMARTSM007173.5E-152473IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-2924118IPR009057Homeodomain-like
PfamPF002493.0E-172570IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-272678IPR009057Homeodomain-like
CDDcd001672.37E-142869No hitNo description
PROSITE profilePS5129427.60272126IPR017930Myb domain
SMARTSM007173.6E-1676124IPR001005SANT/Myb domain
PfamPF002493.5E-1677119IPR001005SANT/Myb domain
CDDcd001679.81E-1379119No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2179125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0009055Molecular Functionelectron carrier activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDNSRANKLG GGGSGSGDEG KACTRGHWRP AEDEKLRQLV RQYGAHNWNA IAEKLQGRSG  60
KSCRLRWFNQ LDPRINRRPF TEDEEERLLA AHHVHGNRWA LIARLFPGRT DNSVKNHWHV  120
IMARKQREES RLLPSYKRSY QDSLIDFKGL HGIGKSAFVV QPSSNYGLEK KQDRHFDSSL  180
LPWKFAPSVS AAMAPPASFL VGLARGEKRD YSASGFCDCT WENYQSLNNN LPSYAALALP  240
NYASPLKYPR HGNDYEATQM IRKNDSDPRD SLANANMMAA GQGGGNESIV HKDVPFIDFL  300
GVGITS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31241256107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063899.10.0PREDICTED: transcription factor MYB21
TrEMBLA0A059BZT10.0A0A059BZT1_EUCGR; Uncharacterized protein
STRINGXP_010063899.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.15e-67myb domain protein 52