PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC040551.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 183aa    MW: 21151.3 Da    PI: 9.6723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC040551.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-131061355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     + rEr+RR++++  f+eL +l+P+ +  ++   ls ++ L +A +YIksL+
  EcC040551.10 10 HDRKTRERNRRNQMKALFSELHSLVPPqS--PTESTLSLSDQLSEAANYIKSLK 61
                  56789**********************44..56666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.65E-8565No hitNo description
PROSITE profilePS5088813.116760IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-13775IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-12975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-91260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-41366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MESKPGSSRH DRKTRERNRR NQMKALFSEL HSLVPPQSPT ESTLSLSDQL SEAANYIKSL  60
KVKVEKMREQ KQKLLEVEKI NTTVNNGLMI KFKSPEIRIW NTGSILEVVL VTGLDDQFMF  120
NETAQVIHEE GADIVNASFS YVGDAMLHTF HAKVRICLYF EPKMVRNYTF RTKGLLQNVD  180
FWN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057409.16e-93PREDICTED: uncharacterized protein LOC104445270
RefseqXP_010057410.16e-93PREDICTED: uncharacterized protein LOC104445270
SwissprotF4JIJ74e-37BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A059C7W95e-89A0A059C7W9_EUCGR; Uncharacterized protein
STRINGXP_010057409.12e-92(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-39bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]