PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EcC039386.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 276aa MW: 30155.1 Da PI: 6.9231

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC039386.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	108.5	3e-34	72	171	1	99
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k ltpsdv+k++rlv+pk++ae+h e +++l++edesg+ W+++++y+ +s++yvltkGW++Fvk+++L++gD+v+F++d+ + ++l++ EcC039386.10 72 FEKPLTPSDVGKLNRLVIPKQHAEKHfplV--GEATQQLSFEDESGKWWRFRYSYWSSSQSYVLTKGWSRFVKDKRLDAGDVVLFHRDRADAERLFI 166 99***********************653..455668********************************************99889999* PP EEE-S CS B3 95 kvfrk 99 +++r+ EcC039386.10 167 GWRRR 171 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.9E-43	64	180	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.7E-32	68	173	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.62E-25	70	162	No hit	No description
SMART	SM01019	1.1E-26	72	172	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-31	72	171	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	15.002	72	172	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010073	Biological Process	meristem maintenance
GO:0010358	Biological Process	leaf shaping
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MSLNHPLSTS DGTPNTLWWT THPAMFRQHN LLLNFNPTDD DPQDEGSPPP PYVLRGAPPP 60 AEPSPAEKEP MFEKPLTPSD VGKLNRLVIP KQHAEKHFPL VGEATQQLSF EDESGKWWRF 120 RYSYWSSSQS YVLTKGWSRF VKDKRLDAGD VVLFHRDRAD AERLFIGWRR RGESSPGASA 180 VAAETRVGGG GGGGGFYAGR RPYPGHNDGP SQPGSYTHGQ AGGAPAAGNN PRRVRLFGVN 240 LECQLDGDEE SEPPGSSHGP TGHAFSSNSS NYTPSH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-45	66	171	2	113	B3 domain-containing transcription factor NGA1
5os9_B	1e-45	66	171	2	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010059417.1	1e-158	PREDICTED: B3 domain-containing protein At2g36080
Swissprot	Q9FNI3	5e-64	Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBL	A0A059DJE9	1e-157	A0A059DJE9_EUCGR; Uncharacterized protein
STRING	XP_010059417.1	1e-158	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	9e-52	B3 family protein