PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC038574.80
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 342aa    MW: 38036.5 Da    PI: 8.1451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC038574.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-13164211355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  EcC038574.80 164 QDHIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYLKQLQ 211
                   6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.329161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-17164227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-13166215No hitNo description
SMARTSM003536.3E-14167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0055114Biological Processoxidation-reduction process
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0004177Molecular Functionaminopeptidase activity
GO:0004506Molecular Functionsqualene monooxygenase activity
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEVTTMRGLP DMGGEDSGFI NPWQMHSFDE LHTLPLAAAL GEHMQGFFPQ PNINFKASMD  60
ASNSVINRPV KQLKTNSWDS CRVDPVSTPQ SFSPSNVLSF VSSNFTNQSS VVKPKEEAIG  120
SKSVGNVSSD MLFPQGSFGN QNYVLKACHG GKRVSTNNSL SQTQDHIIAE RKRREKLSQR  180
FIALSALVPG LKKMDKASVL GDAIKYLKQL QERIKILEEQ TRKRSMESVV FVKKSQVFED  240
GRNSSTDENF SSGPCDELLP EVEARICDND VLLKVHCEKS KGVLEKIIGE VEKLHLTIIN  300
SSLMTFGTSA VDITILAQMN HEFCMPVKDL VKNLRTAFKS FM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-13165220863Transcription factor MYC2
5gnj_B8e-13165220863Transcription factor MYC2
5gnj_E8e-13165220863Transcription factor MYC2
5gnj_F8e-13165220863Transcription factor MYC2
5gnj_G8e-13165220863Transcription factor MYC2
5gnj_I8e-13165220863Transcription factor MYC2
5gnj_M8e-13165220863Transcription factor MYC2
5gnj_N8e-13165220863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERKRRE
2170175RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718430.10.0PREDICTED: transcription factor bHLH18
SwissprotQ9T0723e-63BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A059ASU80.0A0A059ASU8_EUCGR; Uncharacterized protein
STRINGXP_010030892.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-65bHLH family protein