PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC038425.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 285aa MW: 32147.9 Da PI: 9.5938

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC038425.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.1	6.6e-13	173	283	1	99
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkl 84 f+k lt+sd + ++rl + ++f+++h + ++ ++ +++++d + + ++ + ++ +s++yvl++GW keFvk gL +gD v ++ EcC038425.10 173 FKKRLTQSDLGHLSRLLIRRDFVKSHflrwmneetvrQVESGKGADVIVRDMDTcSEHRLVFVFWASSRSYVLKGGWmKEFVKRRGLAAGDEVGIYW 269 899************************98888777545558889999997766778888888*********668************997 PP -SS.SEE..EEEEE-S CS B3 85 dgr.sefelvvkvfrk 99 d s+f +++v+rk EcC038425.10 270 DAIaSKF--HFSVLRK 283 7655666..8888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	8.04E-16	171	283	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.33E-19	173	282	No hit	No description
Pfam	PF02362	3.6E-9	173	282	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.9E-16	173	283	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	3.6E-6	173	284	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MKLIDFLGPD SPPIGDILRG EVHSPPLTDS LLSRLSCQQD REKKPIGNHL RSEVHLPASM 60 DSSSCSCLYY LHNQEKNGHE GVRCISSARV VVDREFFPLA PDQNTKEVGG PRQEVVPAQP 120 KRKSMASLTN AESLIAEKKA KCKRTQKGKK EASGCGAEEV STELTLLFDP YKFKKRLTQS 180 DLGHLSRLLI RRDFVKSHFL RWMNEETVRQ VESGKGADVI VRDMDTCSEH RLVFVFWASS 240 RSYVLKGGWM KEFVKRRGLA AGDEVGIYWD AIASKFHFSV LRKAN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018728844.1	0.0	PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBL	A0A059C5T8	1e-158	A0A059C5T8_EUCGR; Uncharacterized protein
STRING	XP_010058723.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	2e-29	B3 family protein