PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC037860.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 692aa    MW: 75834.9 Da    PI: 5.5841
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC037860.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.62.7e-1283296901374
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   lv+ Ll+cAeav+++d  la+++L rl   ++p gd+mqR+ ++f+eAL +rl++ v+ +    +ps  s+    ++l ++++++ ++P++kf+h+t
  EcC037860.30 329 LVHFLLACAEAVAKEDYLLARQYLDRLYRVVTPIGDSMQRVGSFFAEALDERLTSRVTPTK-FSKPSGLSSPVPPNSLEIHQILYRACPYIKFAHFT 424
                   6899**************************************************9555444.3455555556688999999**************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                   aNqaI ea++ eervH+iD+di qG QWp+++qaLa+Rp+g+p lRiTgvgs      e+++etg+ La +A++l++pfef++ v+++le+l+++ L
  EcC037860.30 425 ANQAIFEAFADEERVHVIDLDILQGYQWPSFMQALAARPGGAPLLRITGVGS----CIEMVSETGRCLAALARSLRLPFEFHP-VSEQLEALKPHLL 516
                   ****************************************************....***************************.7************ PP

          GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                   +++ gEalaVn+v  lhr++  s +l s    +L ++++  P +v++veqea+hn++ Fl rfleal+yysa+fdsl++++p++s +r+kvE+ +++
  EcC037860.30 517 HWRVGEALAVNSVNCLHRVP--SICLGS----LLTMIRDQAPSIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDVTFPSNSVHRAKVEQLIFA 607
                   *******************9..777777....***************************************************************** PP

          GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +ei+n+vaceg+er+erhe+lekWr+ +e  GF  vplse+a++q k+l+  ++  gy++ e+ g+l+lgW+dr++v+ SaWr
  EcC037860.30 608 PEIRNIVACEGSERTERHERLEKWRKVMEGRGFAGVPLSENAMTQSKTLVGLYSRGGYTLREDMGCLLLGWQDRAIVASSAWR 690
                   **********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.51303670IPR005202Transcription factor GRAS
PfamPF035149.2E-126329690IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0042254Biological Processribosome biogenesis
GO:0042538Biological Processhyperosmotic salinity response
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0030529Cellular Componentintracellular ribonucleoprotein complex
GO:0005515Molecular Functionprotein binding
GO:0016597Molecular Functionamino acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MINSLCGSMG SLGAQSSRTQ IQPSLPTNDS ATQSNSTLPC PDSMENGKAA ALTAPSLEYT  60
SPRFDVVDNP TMDSPTTALL ASILSSDQMD GLDYMMCSPG RNLPSLESAL THNYNHAQAM  120
QGQSVSGCSP PRFASQQGCP SSGGRMERGL SPLQGVLSSA RKSDQVTVQS NCISLDFLED  180
YNVTDEFGGY SLSGPVPGFG TTQCFDVQTT ATASLEMPNA PTFHAGPAEE AIGGDYKYET  240
CQEIGGFCNA KSLASATNLT EQLQREHCQE QQQLSSFVVH VPTDSEQVIC TRTCARTLTN  300
LEVRNLMPLN HLSKLMFVSQ QEQDRGLQLV HFLLACAEAV AKEDYLLARQ YLDRLYRVVT  360
PIGDSMQRVG SFFAEALDER LTSRVTPTKF SKPSGLSSPV PPNSLEIHQI LYRACPYIKF  420
AHFTANQAIF EAFADEERVH VIDLDILQGY QWPSFMQALA ARPGGAPLLR ITGVGSCIEM  480
VSETGRCLAA LARSLRLPFE FHPVSEQLEA LKPHLLHWRV GEALAVNSVN CLHRVPSICL  540
GSLLTMIRDQ APSIVTLVEQ EASHNGPYFL GRFLEALHYY SAIFDSLDVT FPSNSVHRAK  600
VEQLIFAPEI RNIVACEGSE RTERHERLEK WRKVMEGRGF AGVPLSENAM TQSKTLVGLY  660
SRGGYTLRED MGCLLLGWQD RAIVASSAWR CS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-843186896377Protein SCARECROW
5b3h_D1e-843186896377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030721.10.0PREDICTED: scarecrow-like protein 21
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A059APV00.0A0A059APV0_EUCGR; Uncharacterized protein
STRINGXP_010030721.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165101013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-83RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]