PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 274aa MW: 30863.9 Da PI: 5.8105

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC037807.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.4e-14	1	45	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eEd++l +++ +G g+W++++ g+ R +k+c++rw +yl EcC037807.10 1 WSPEEDQRLRNYILNHGHGCWSSVPINTGLQRNGKSCRLRWINYL 45 *******************************************97 PP
2	Myb_DNA-binding	58.1	2e-18	51	96	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T+eE+e+++ ++++ G++ W+ Ia++++ gRt++++k++w++yl EcC037807.10 51 RGMFTPEEEEIILSLHRLIGNK-WSQIAKHLP-GRTDNEIKNHWHSYL 96 789*****************.*****.**********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00167	5.23E-9	1	45	No hit	No description
PROSITE profile	PS51294	16.29	1	45	IPR017930	Myb domain
SMART	SM00717	2.3E-5	1	47	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.4E-28	1	92	IPR009057	Homeodomain-like
Pfam	PF00249	3.1E-12	1	45	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-21	1	52	IPR009057	Homeodomain-like
PROSITE profile	PS51294	28.282	46	100	IPR017930	Myb domain
SMART	SM00717	5.9E-16	50	98	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-17	51	96	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-27	53	100	IPR009057	Homeodomain-like
CDD	cd00167	4.14E-13	54	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
WSPEEDQRLR NYILNHGHGC WSSVPINTGL QRNGKSCRLR WINYLRPGLK RGMFTPEEEE 60 IILSLHRLIG NKWSQIAKHL PGRTDNEIKN HWHSYLKKKV ANKTESSSSS EARHDAQSQC 120 TNSDNVESLP SPDQIPTNQN ASVHAPSQEQ KEKMSLDFPN GGPRSCLPKI FFAEWLNQAD 180 QGYNVPTYGD AFDYRSNLQD SLVHDWCTSD FGNSYGGEYV GNELSKGSAS ASVSDMYSSR 240 LKSEMDQVSG GGFYLDYFSG DDMCSQFDMG SDVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-24	1	100	10	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269\|PubMed:11581165, ECO:0000269\|PubMed:19482971}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010035126.1	0.0	PREDICTED: transcription factor LAF1
Swissprot	Q9M0K4	1e-53	LAF1_ARATH; Transcription factor LAF1
TrEMBL	A0A058ZYA5	0.0	A0A058ZYA5_EUCGR; Uncharacterized protein
STRING	XP_010035126.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25560.1	7e-56	myb domain protein 18

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]