PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC037516.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 327aa    MW: 36088.8 Da    PI: 6.593
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC037516.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +l+ +++q+G+++W++I++  g+ R++k+c++rw +yl
     EcC037516.40 15 RGQWTPEEDNKLASYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 62
                     89********************************************97 PP
2Myb_DNA-binding43.19.4e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++ E++ + ++++ lG++ W+ Ia+ ++ gRt++++k++w++
     EcC037516.40  69 GEFSEAEEQTIMRLHAVLGNR-WSIIAAQLP-GRTDNDVKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-25665IPR009057Homeodomain-like
PROSITE profilePS5129426.1291066IPR017930Myb domain
SuperFamilySSF466891.68E-2913109IPR009057Homeodomain-like
SMARTSM007173.2E-141464IPR001005SANT/Myb domain
PfamPF002495.4E-181562IPR001005SANT/Myb domain
CDDcd001678.11E-131862No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2466117IPR009057Homeodomain-like
SMARTSM007171.9E-1367115IPR001005SANT/Myb domain
PROSITE profilePS5129419.89267117IPR017930Myb domain
PfamPF002498.4E-1369111IPR001005SANT/Myb domain
CDDcd001675.38E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
KMGRIPCCEK DSVKRGQWTP EEDNKLASYI AQHGTRNWRL IPKNAGLQRC GKSCRLRWTN  60
YLRPDLKHGE FSEAEEQTIM RLHAVLGNRW SIIAAQLPGR TDNDVKNYWN TKLKKKLSGM  120
GIDPVTHKPF SHLMAEIATA LPPPHVAHLA EAALGCFKDE MLHLLTKKRV DFQLQRSNAP  180
PGTSTSTCLT TKSDEKEDTV EKIRLGLSRA ILEPDMLPPS KPWEPMGAPA TKFIGSCSGF  240
PSSASEFQYG HSGFGNEGDD GSPWNTSMCT GSTCTAGDQQ GRLDGIIEEE NGEESKGEKD  300
LGSGSSIFNS DCVLWDLPAD DLMNPIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063219.10.0PREDICTED: transcription factor MYB80
SwissprotQ7XQN11e-119MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A059BWY10.0A0A059BWY1_EUCGR; Uncharacterized protein
STRINGXP_010063219.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-117myb domain protein 103