PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EcC037330.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 219aa MW: 24995.7 Da PI: 9.2629

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC037330.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	6.8e-13	36	88	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++h e+Er+RR+++ s + Lr+ lP + ++K s ++ +Av+YIk+L+ EcC037330.10 36 KKKKHREVERQRRQEMASLCASLRSKLPLEF--IKGKRSTSDHMNEAVNYIKHLR 88 6899***********************65..******************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-13	34	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.79E-10	34	91	No hit	No description
PROSITE profile	PS50888	13.935	35	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-10	36	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-10	36	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-4	41	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MESSSSIFKV VRNRRRKFSV TNYHERAGQD GDHGDKKKKH REVERQRRQE MASLCASLRS 60 KLPLEFIKGK RSTSDHMNEA VNYIKHLRAK IGELGFKRDE LKSIHSLAAL GSPSSNSSCL 120 TTFTVNLCCE IVEIVISQSI REKDFLLSTV LDLLLQQGLD VVSCFSSQAY DKIVHTIRCE 180 LVSNLSYIYS KYAGLQSSCQ SFVFLLNIFR VEPFIQHDL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061822.1	1e-112	PREDICTED: transcription factor bHLH36
TrEMBL	A0A059DK50	1e-105	A0A059DK50_EUCGR; Uncharacterized protein
STRING	XP_010061822.1	1e-111	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4479	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	7e-27	bHLH family protein