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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC037206.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19684.6 Da PI: 7.6267 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.3 | 1.5e-16 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r++tf kR+ g+lKKA+EL +LC+++ + ii+ + EcC037206.30 10 LITNDSVRKTTFRKRKGGLLKKASELKTLCGVDTCAIIYTAN 51 599******************************997776543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.787 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.46E-27 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 6.02E-25 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-17 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MGRRKVRLEL ITNDSVRKTT FRKRKGGLLK KASELKTLCG VDTCAIIYTA NDAEPHVWPS 60 PEDAQRVLER FQSLPSKKQG KHMLNHEDYR PKDVSMLELK LENGIKRNQD LEMELLLLDH 120 LSGKNVVDLI KDDEMKMLYQ SVDDKIRDLT LQMANLKASE VEEDAHSTAP AN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RRKVRLELITNDSVRKTTFRKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010069013.1 | 1e-125 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A059ATZ4 | 1e-123 | A0A059ATZ4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010069013.1 | 1e-124 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 6e-28 | M-type_MADS family protein |