PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC036728.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 481aa    MW: 53856.9 Da    PI: 6.3645
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC036728.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix772.9e-24108207186
      trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                   +Wt+ +v++Li a+ +++++ + +              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ ++++
  EcC036728.40 108 KWTDTMVKLLIMAVLYIGDEGGPTTessdakkkpgsllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSLLE 204
                   7**************99999996544567778899999**********************************************5599999999998 PP

      trihelix  84 qle 86 
                    ++
  EcC036728.40 205 VMD 207
                   886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-21106232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0009733Biological Processresponse to auxin
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEPNGLGGGI FGGIGPGMLG LEMSLHQQQN PPPNSQNPHS LHHPQLVAYA HHEADHHHPQ  60
PQPAKPGYAF AGKSKQQLTL SDDDEAGFNG DDGAGDGKRK ASPWQRMKWT DTMVKLLIMA  120
VLYIGDEGGP TTESSDAKKK PGSLLQKKGK WKSVSRAMME KGFYVSPQQC EDKFNDLNKR  180
YKRVNDILGK GTACRVVENQ SLLEVMDLTT KMKEEVKKLL NSKHLFFREM CAYHNSCGHG  240
PGGSGGAGGA HHSPEVAVEP SHIQQQQQVP QRGCFHAADS AAGDHLGKTE TEASKMLKGG  300
SCEEEYGDDE DEDSEDEDDD DSDDEVGEGG SRGHSGQGHE DEHEHSERTS SLKRQRKYLF  360
PPPTMFVQQL SGEATGVMQD GNRSPWEKKQ WMKVKLVQLE EQQVSYQLQA YELEKQRLKW  420
LKFSGKKERD MERAKLENER RRLENERMVL LLRQKELELL DLQQQQQHSS NKRSEPSSIT  480
G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069064.10.0PREDICTED: uncharacterized protein LOC104456045
TrEMBLA0A059DFB80.0A0A059DFB8_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010069064.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-64sequence-specific DNA binding transcription factors