PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC036030.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 166aa    MW: 18478.1 Da    PI: 10.7007
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC036030.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.4e-14140948
                     HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     d++l+d+v+++G g+W++ ++  g+ R++k+c++rw++yl
     EcC036030.10  1 DQKLIDYVQKHGEGNWNSLPKAAGLLRCGKSCRLRWLNYL 40
                     79**********************99************97 PP
2Myb_DNA-binding54.13.5e-174691148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
     EcC036030.10 46 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 91
                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001673.10E-8140No hitNo description
PfamPF002492.4E-12140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-19147IPR009057Homeodomain-like
PROSITE profilePS5129413.1140IPR017930Myb domain
SMARTSM007170.0017142IPR001005SANT/Myb domain
SuperFamilySSF466893.91E-25187IPR009057Homeodomain-like
PROSITE profilePS5129426.2464195IPR017930Myb domain
SMARTSM007174.2E-164593IPR001005SANT/Myb domain
PfamPF002497.4E-164691IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-264895IPR009057Homeodomain-like
CDDcd001672.10E-114891No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
DQKLIDYVQK HGEGNWNSLP KAAGLLRCGK SCRLRWLNYL RPDLKRGNFG EDEEDLIIKL  60
HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLLSKGI IHRRPSAAKI KSSTEDKTVH  120
QSSAAISIKE KGVSPDGDRL DLKLGVSGGP AKHSKPAQSK EINGGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-2619535128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032684.11e-116PREDICTED: myb-related protein 308
SwissprotQ388512e-59MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A059CZV31e-114A0A059CZV3_EUCGR; Uncharacterized protein
STRINGXP_010032684.11e-115(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.17e-62myb domain protein 6