PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC035998.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 321aa    MW: 35837.8 Da    PI: 9.442
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC035998.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.91.9e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
     EcC035998.20 14 KGPWSPEEDARLKAYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.52.6e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++++eE+ ++  +    G++ W+ Ia+ ++ gRt++++k++w++
     EcC035998.20  69 GAFSEEEENIICSLYIAIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      79*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.905962IPR017930Myb domain
SuperFamilySSF466891.21E-2611109IPR009057Homeodomain-like
SMARTSM007177.9E-131364IPR001005SANT/Myb domain
PfamPF002499.2E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-241569IPR009057Homeodomain-like
CDDcd001671.52E-91662No hitNo description
PROSITE profilePS5129421.98263117IPR017930Myb domain
SMARTSM007172.0E-1167115IPR001005SANT/Myb domain
PfamPF002494.7E-1169111IPR001005SANT/Myb domain
CDDcd001671.15E-770113No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009081Biological Processbranched-chain amino acid metabolic process
GO:0009570Cellular Componentchloroplast stroma
GO:0003677Molecular FunctionDNA binding
GO:0004084Molecular Functionbranched-chain-amino-acid transaminase activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDARLKAYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNLKHGA FSEEEENIIC SLYIAIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGR  120
QPKERSTGRI TNGLKEEATK RDHKESSMVN GAGNGTINYN QYWPQLPDFA TPSALHEIPN  180
IPQHGSQSDL LTCVGARFSE DHLRSVFSTL DNFQNPIHIP PSPSLKFDML TEPLSNGLGS  240
FQSVNSMCCD TSQLSNPHFI STTQEAVPNA WNELQYFAND VAKMKRSIAT NRAQMCCWKL  300
SAATVAVKRA ALQRAATVGM T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028053.10.0PREDICTED: transcription factor RAX3
TrEMBLA0A059AMT90.0A0A059AMT9_EUCGR; Uncharacterized protein
STRINGXP_010028053.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-82myb domain protein 84