PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC035387.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 483aa    MW: 53141.6 Da    PI: 6.5172
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC035387.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-1759103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT eE+e++++a k++G g W+ I +++g ++t+ q++s+ qk+
     EcC035387.20  59 REKWTDEEHERFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 103
                      789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1753107IPR009057Homeodomain-like
PROSITE profilePS5129421.54854108IPR017930Myb domain
TIGRFAMsTIGR015571.9E-1657106IPR006447Myb domain, plants
SMARTSM007171.1E-1258106IPR001005SANT/Myb domain
PfamPF002492.8E-1459102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-95999IPR009057Homeodomain-like
CDDcd001671.19E-1061104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MAGEAQNEVA VSSALFTVPN RPSKVGSQLE AVDNLKELQV LENDQTPKVR KPYTISKQRE  60
KWTDEEHERF LEALKLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVARG VSGSSEGVIK  120
PIEIPPPRPK RKPMHPYPRK SVDSKEVKLS YQQERSPSPI SSVADENTGS PTSVLSAHGS  180
DMLGSASLHQ QNRCSSPTSC TTDVPSIGLA VIEKQPEIFK EEDKGSLSST QMPSGLTLGN  240
LPSMNCDLSS KNTSSPEEIG GTEAPSIKLF GRTVLVTEIQ KPDHQEAGIK KSPAQKTGED  300
DSVTEDEGLG KPLSSVEFDM QLSLGLACGN NGFLHSGAHV ATAMKLQKED VESSRFTSDC  360
FLPWWPLYQG PPFIYVTPSD STLIQGPLDS HEDRKVEVEE IIKETSSETN TVAKKTEGYG  420
DNNVENNADG VFPKCQKHLE RRTHPGDCKK GFVPYKRCLA ERDVKSPVIV SEERQAQRTR  480
VCS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037006.10.0PREDICTED: protein REVEILLE 7
RefseqXP_010037007.10.0PREDICTED: protein REVEILLE 7
TrEMBLA0A059A4960.0A0A059A496_EUCGR; Uncharacterized protein
STRINGXP_010037005.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.17e-49MYB_related family protein