PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

EcC034880.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WOX

Protein Properties

Length: 293aa MW: 32232.7 Da PI: 6.5651

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC034880.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.9	2.3e-15	25	85	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ EcC034880.20 25 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgAVGDANVFYWFQNRRSRSRR 85 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.5	8e-35	24	87	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q EcC034880.20 24 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 87 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.256	21	86	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-14	22	92	IPR009057	Homeodomain-like
SMART	SM00389	9.1E-7	23	90	IPR001356	Homeobox domain
Pfam	PF00046	4.4E-13	25	85	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.4E-9	25	92	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006979	Biological Process	response to oxidative stress
GO:0055114	Biological Process	oxidation-reduction process
GO:0003677	Molecular Function	DNA binding
GO:0004601	Molecular Function	peroxidase activity
GO:0020037	Molecular Function	heme binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MEDQSQEPNG SPSHGHERGG GEPVRSRWTP KPEQILILES IFNSGMVNPP KDETVRIRKL 60 LEKFGAVGDA NVFYWFQNRR SRSRRRQRQM QAASLAAATA AAEQRNNNYQ GQQAEGAIHH 120 QCYDGSSSSN MGLASYGSSC SPYSNYSAYG SASSSSSCGV ISQEASDSFF PSFVSHHHVG 180 FPESDQNCTA GLASSFLSHP EAPNMHYHQQ SGIITVFING VPTEVPRGPL DMKSAFGQDA 240 ILVHSSGLPV PTNEYGYLMQ SLEHGESYFL VIQSCWQIYV RHVFIILCNE SLC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010055044.1	0.0	PREDICTED: WUSCHEL-related homeobox 11
Swissprot	Q6X7J3	1e-65	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A059DHD3	0.0	A0A059DHD3_EUCGR; Uncharacterized protein
STRING	XP_010055044.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	7e-33	WUSCHEL related homeobox 12

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]